PhD Linking soil microbial communities - NUI

Forum Rules

Microbes Forum Rules and Regulations


In addition to all other provisions of the Terms of Use, use of and access to the forum is subject to the following Rules and Regulations.


All visitors can view the forum, however only registered users are allowed to post messages. Registrations are typically processed within 24 hours.


The real-time nature of this forum makes it impossible for us to review all messages or confirm the validity of information posted. We are not responsible for the content of any messages posted or any outside websites or information linked in any message – all messages are solely the responsibility of, and express only the views of, their respective authors. We may remove objectionable messages if and when we deem it necessary, and our decisions on such matters are solely within our discretion.


The guidelines below are designed to clarify various responsibilities of community members (users) here at Please read and become familiar with them.


Forum-wide Rules and Regulations


  1. Registration is required in order to post on the forum.
  2. Posts are to be made in a relevant forum. Users are asked to read the forum descriptions before posting. Users consistently posting to the wrong forum may be given a warning.
  3. Users should post in a way that is respectful of other users. Flaming or abusing users in any way will not be tolerated and will lead to revocation of access.
  4. Users are asked to not act as "back seat moderators". If members note an issue which contravenes something in these guidelines they are welcome to bring it to the attention of a Moderator. Only do this if a moderator has not replied to the post within 6 hours. Users who consistently "act" as moderators may be warned or access revoked.
  5. Users should remember this board is aimed at a general audience. Posting generally offensive text, images, links, etc will not be tolerated and will lead to a revocation of access.
  6. Users are asked to respect the copyright of other users, sites, media, etc. Users linking to or asking for information on such material without permission will receive a warning and their post will be removed. If the behavior continues, the users’ access will be revoked.
  7. Users should respect the bandwidth of other users and sites. The use of inline image tags pointing to data stored on third party systems for which the user has not received permission to link to may be removed.
  8. Users should post in a way which is consistent with "normal writing". That is users should not post excessive numbers of emoticons, large, small or colored text, etc. Similarly users should not SHOUT or use excessive punctuation (e.g. ! and ?) in topic titles or posts. Users consistently abusing this will be warned.
  9. Users should use an appropriate, specific, descriptive title when posting a new topic. Examples of good titles include; "How do I start a batch culture", "I’m having problems with my gram stains", etc. Examples of bad titles include; "Help me!", "My bug!", "I've got a question!", etc.
  10. Spam is not tolerated here under any circumstance. This includes offering company services, equipment and supplies, soliciting employment, chain letters, etc. Users posting spam will be warned and their post removed. If the behavior continues, the users’ access will be revoked.
  11. The moderating, support and other teams reserve the right to edit or remove any post at any time. The determination of what is construed as indecent, vulgar, spam, etc. as noted in these points is up to Team Members and not users.


Warnings and Bans (Revocation of Access)


  1. Users will be warned at least once for a particular offence before being banned.
  2. The moderating, support and other teams reserve the right to ban an offending user at any time.
  3. Users who feel they have been unfairly warned or banned are welcome to contact the Moderator team leader. If the Moderator team leader feel you were treated badly they will remove a warning or ban. If you feel the Moderator team leader is also unfair you may contact a Moderator group member. However, a decision at this level is final. Contacting Moderator group members over warning matters should be done so as a very last resort ... group members do not want to be bothered unless vital.
  4. Any attempt to circumvent a temporary ban will lead to that ban being made permanent. Circumvention includes re-registering under a non-banned username, changing IP addresses to evade an IP ban, registering a new email account to evade an email ban, etc.
  5. Permanent bans are a last resort and thought is given before implementing them.


Revised:  March 11, 2016.

1 post / 0 new
PhD Linking soil microbial communities - NUI

PhD Linking soil microbial communities and environmental stability: a metagenomic study of soil ecosystem processes.
National University of Ireland
Galway, University Road,
A central theme in ecology is understanding what are the mechanisms that promote ecological stability, however, the relationships between ecological stability, biodiversity and ecosystem function in the soil environment are still poor. This is an important knowledge gap as soil microbial communities provide essential ecological services, such as nutrient cycling, carbon sequestration, and pollutant bioremediation. The poor mechanistic understanding of belowground ecosystem stability reduces our ability to predict the effect of disturbances in terrestrial ecosystems.
This project is focused on understanding the relationships between environmental change and soil microbial communities. This primarily a data analysis position focused on an existing large soil environmental DNA sequence dataset spanning a whole seasonal cycle and collected from three soil monitoring sites in Australia. This is a truly unique environmental DNA sequence dataset containing a huge amount of information about microbes and their functional genes in soils. In addition, you will have access to soil property and wireless sensor network data, which will allow the investigation of how environmental conditions and stability determine the ecology of specific microbial groups and their functional genes.
This project is suited to a student with some existing knowledge of statistical analysis and bioinformatics, while further training will be provided in metagenomic and microbiome sequence analysis and multivariate statistics. Ability to or an interest in learning to work in the command line in Linux and R is essential, and an interest in learning ecological modelling would be an advantage. There will also be opportunities for further experiments and molecular analyses of soil and plant-root microbiomes depending on the student’s interests.
This position is open to EU and non-EU applicants. The studentship is for four years and covers the EU fees and living expenses to €12,000 per year, while further remuneration from demonstrating and tutoring is also possible. Prospective non-EU students are advised to enquire about non-EU fees.
Deadline for applications 1 of October 2017. For further information, contact alexandre.demenezes [-at-]
More information available at:
Posted: August 20, 2017.